tRForest

Explore machine-learning predicted targets
for Transfer RNA-related fragments (tRFs)

Dutta Lab University of Virginia UAB School of Medicine

tRForest Statistics


Number of tRFs with targets by species

Human tRFs (154 total)
• tRF-1s: 32
• tRF-3s: 62
• tRF-5s: 60

Drosophila tRFs (77 total)
• tRF-1s: 17
• tRF-3s: 43
• tRF-5s: 17

S. pombe tRFs (51 total)
• tRF-1s: 10
• tRF-3s: 21
• tRF-5s: 20

Zebrafish tRFs (103 total)
• tRF-1s: 36
• tRF-3s: 35
• tRF-5s: 32
Mouse tRFs (164 total)
• tRF-1s: 30
• tRF-3s: 92
• tRF-5s: 42

C. elegans tRFs (31 total)
• tRF-3s: 15
• tRF-5s: 16


Xenopus tropicalis tRFs (48 total)
• tRF-1s: 17
• tRF-3s: 13
• tRF-5s: 18



Number of transcripts and genes by species

Human
• Transcript targets: 127,519
  ‣  ≥ 0.9 prediction score: 30,111
• Gene targets: 69,610
  ‣  ≥ 0.9 prediction score: 16,051

Drosophila
• Transcript targets: 2,452
  ‣  ≥ 0.9 prediction score: 451
• Gene targets: 1,346
  ‣  ≥ 0.9 prediction score: 227

S. pombe
• Transcript targets: 376
  ‣  ≥ 0.9 prediction score: 50
• Gene targets: 296
  ‣  ≥ 0.9 prediction score: 49

Zebrafish
• Transcript targets: 23,373
  ‣  ≥ 0.9 prediction score: 18,603
• Gene targets: 7,145
  ‣  ≥ 0.9 prediction score: 5,624
Mouse
• Transcript targets: 89,246
  ‣  ≥ 0.9 prediction score: 27,326
• Gene targets: 57,980
  ‣  ≥ 0.9 prediction score: 17,336

C. elegans
• Transcript targets: 570
  ‣  ≥ 0.9 prediction score: 308
• Gene targets: 248
  ‣  ≥ 0.9 prediction score: 131

Xenopus
• Transcript targets: 19,344
  ‣  ≥ 0.9 prediction score: 3,098
• Gene targets: 7,357
  ‣  ≥ 0.9 prediction score: 1,194